We compare the top \(n\) (\(n\) = 500, 1000, 2000) rows scored by four methods: SD (standard deviation), CV (coefficient of variation), MAD (median absolute deviation) and ATC (ability to correlate to other rows) with five datasets: Golub leukemia dataset, HSMM single cell RNASeq dataset, MCF10CA single cell RNASeq dataset, Ritz ALL dataset and TCGA GBM microarray dataset. For each dataset, we visualize the top rows (or, in other words, the top genes) by heatmaps (where rows are scaled by \(z\)-score method) and Euler diagram.
Figure 1A. Heatmap of the top 500 genes with the highest SD, CV, MAD and ATC scores, Golub leukemia dataset
Figure 2A. Euler diagram of the top 500 genes with the highest SD, CV, MAD and ATC scores, Golub leukemia dataset
Figure 1B. Heatmap of the top 1000 genes with the highest SD, CV, MAD and ATC scores, Golub leukemia dataset
Figure 2B. Euler diagram of the top 1000 genes with the highest SD, CV, MAD and ATC scores, Golub leukemia dataset
Figure 1C. Heatmap of the top 2000 genes with the highest SD, CV, MAD and ATC scores, Golub leukemia dataset
Figure 2C. Euler diagram of the top 2000 genes with the highest SD, CV, MAD and ATC scores, Golub leukemia dataset
Figure 3A. Heatmap of the top 500 genes with the highest SD, CV, MAD and ATC scores, HSMM single cell RNASeq dataset
Figure 4A. Euler diagram of the top 500 genes with the highest SD, CV, MAD and ATC scores, HSMM single cell RNASeq dataset
Figure 3B. Heatmap of the top 1000 genes with the highest SD, CV, MAD and ATC scores, HSMM single cell RNASeq dataset
Figure 4B. Euler diagram of the top 1000 genes with the highest SD, CV, MAD and ATC scores, HSMM single cell RNASeq dataset
Figure 3C. Heatmap of the top 2000 genes with the highest SD, CV, MAD and ATC scores, HSMM single cell RNASeq dataset
Figure 4C. Euler diagram of the top 2000 genes with the highest SD, CV, MAD and ATC scores, HSMM single cell RNASeq dataset
Figure 5A. Heatmap of the top 500 genes with the highest SD, CV, MAD and ATC scores, MCF10CA single cell RNASeq dataset
Figure 6A. Euler diagram of the top 500 genes with the highest SD, CV, MAD and ATC scores, MCF10CA single cell RNASeq dataset